Aziz, R. K, Bartels, D, Best, A. A, DeJongh, M, Disz, T, Edwards, R. A, Formsma, K, Gerdes, S, Glass, E. M, Kubal, M, Meyer, F, Olsen, G. J, Olson, R, Osterman, A. L, Overbeek, R. A, McNeil, L. K, Paarmann, D, Paczian, T, Parrello, B, Pusch, G. D, Reich, C, Stevens, R, Vassieva, O, Vonstein, V, Wilke, A and Zagnitko, O The RAST server: rapid annotations using subsystems technology.
BMC Genomics 2008. 9: 75
Clarke-Pearson, M and Brady, S. F Paerucumarin, a new metabolite produced by the
pvc gene cluster from
Pseudomonas aeruginosa.
J. Bacteriol 2008. 190: 6927-6930.
De Vleesschauwer, D and Hofte, M Using Serratia plymutica to control fungal pathogens of plants. CAB Reviews 2003. 2: 189-257.
Ha, W. J, Kim, Y. C, Jung, H and Park, S. K Control of the root-knot nematode (
Meloidogyne spp.) on cucumber by a liquid bio-formulation containing chitinolytic bacteria, chitin, and their products.
Res. Plant Dis 2014. 20: 112-118. In Korean
Harris, A. K. P, Williamson, N. R, Slater, H, Cox, A, Abbasi, S, Foulds, I, Simonsen, H. T, Leeper, F. J and Salmond, G. P. C The
Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation.
Microbiology 2004. 150: 3547-3560.
Han, S. H, Kang, B. R, Lee, J. H, Kim, H. J, Park, J. Y, Kim, J. J and Kim, Y. C Isolation and characterization of oligotrophic bacteria possessing induced systemic disease resistance against plant pathogens.
Plant Pathol. J 2012. 28: 68-74.
Kim, H. J, Choi, H. S, Yang, S. Y, Kim, I. S, Yamaguchi, T, Sohng, J. K, Park, S. K, Kim, J.-C, Lee, C. H, McSpadden, Gardener B. B and Kim, Y. C Both extracellular chitinase and a new cyclic lipopeptide, chromobactomycin, contribute to the biocontrol activity of
Chromobacterium sp. C61.
Mol. Plant Pathol 2014. 15: 122-132.
Kim, H. J, Park, J. Y, Han, S. H, Lee, J. H, Rong, X, McSpadden, Gardener B. B, Park, S. K and Kim, Y. C Draft genome sequence of the biocontrol bacterium
Chromobacterium sp. Strain C-61.
J. Bacteriol 2011a. 193: 6803-6804.
Kim, J. C, Choi, G. J, Park, J. H, Kim, H. T and Cho, K. Y Activity against plant pathogenic fungi of phomalactone isolated from
Nigrospora sphaerica.
Pest Manag. Sci 2001. 57: 554-559.
Kim, Y. C, Jung, H, Kim, K. Y and Park, S. K An effective biocontrol bioformulation against Phytopathora blight of pepper using growth mixtures of combined chitinolytic bacteria under different field conditions.
Eur. J. Plant Pathol 2008. 120: 373-382.
Kim, Y. C, Lee, J. H, Bae, Y.-S, Sohn, B.-K and Park, S. K Development of effective environmentally-friendly approaches to control Alternaria blight and anthracnose disease of Korean ginseng.
Eur. J. Plant Pathol 2010. 127: 443-450.
Kim, Y. C, Leveau, J, McSpadden, Gardener B. B, Pierson, E. A, Pierson, L. S and Ryu, C.-M The multifactorial basis for plant health promotion by plant-associated bacteria.
Appl. Environ. Microbiol 2011b. 77: 15848-1555.
Kimura, M A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.
J. Mol. Evol 1980. 16: 111-120.
Li, P. K, wok, A. H. Y, Jiang, J, Ran, T, Xu, D, Wang, W. and Leung, F. C Comparative genome analyses of
Serratia marcescens FS14 reveals its high antagonistic potential.
PLoS One 2015. 10: ne0123061
McSpadden, Gardener B. B, Kim, I. S, Kim, K. Y and Kim, Y. C Draft genome sequence of a chitinase-producing biocontrol bacterium,
Lysobacter antibioticus HS124.
Res. Plant Dis 2014. 20: 216-218.
Overbeek, R, Begley, T, Butler, R. M, Choudhuri, J. V, Chuang, H, -, Y, Cohoon, M, de Crécy-Lagard, V, Diaz, N, Disz, T, Edwards, R, Fonstein, M, Frank, E. D, Gerdes, S, Glass, E. M, Goesmann, A, Hanson, A, Iwata-Reuyl, D, Jensen, R, Jamshidi, N, Krause, L, Kubal, M, Larsen, N, Linke, B, McHardy, A. C, Meyer, F, Neuweger, H, Olsen, G, Olson, R, Osterman, A, Portnoy, V, Pusch, G. D, Rodionov, D. A, Rückert, C, Steiner, J, Stevens, R, Thiele, I, Vassieva, O, Ye, Y, Zagnitko, O and Vonstein, V The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.
Nucleic Acids Research 2005. 33: 5691-5702.
Park, J.-K, Lee, S.-H, Lee, J.-H, Han, S, Kang, H, Kim, J.-C, Kim, Y. C and McSpadden, Gardener B. B Sampling and selection factors that enhance the diversity of microbial collections: application to biopesticide development.
Plant Pathol. J 2013. 29: 144-153.
Ugras, S, Sezen, K, Kati, H and Demibag, Z Purification and characterization of an antibacterial substance produced by pest-originated
Serratia marcescens Mm3.
Turk. J. Biol 2014. 38: 177-184.
Zerbino, D. R and Birney, E Velvet: algorithms for
de novo short read assembly using de Bruijn graphs.
Genome Research 2008. 18: 821-829.
Zerbino, D. R, McEwen, G. K, Margulies, E. H and Birney, E Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read
de Novo assembler.
PLoS ONE 2009. 4: ne8407