Fig. 1.

Table 1.
Locus | Primer | Primer sequence (5’-3’) | Reference |
---|---|---|---|
SSU | NS1 | GTAGTCATATGCTTGTCTC | White et al. (1990) |
NS4 | CTTCCGTCAATTCCTTTAAG | ||
LSU | LSU1Fd | GRATCAGGTAGGRATACCCG | Crous et al. (2009) |
LR5 | ATCCTGAGGGAAACTTC | Vilgalys and Hester (1990) | |
ITS | V9G | TTACGTCCCTGCCCTTTGTA | de Hoog and Gerrits van den Ende (1998) |
ITS4 | CCTCCGCTTATTGATATGC | White et al. (1990) | |
gapdh | gpd1 | CAACGGCTTCGGTCGCATTG | Berbee et al. (1999) |
gpd2 | GCCAAGCAGTTGGTTGTGC | ||
tef1 | EF1-728F | CATCGAGAAGTTCGAGAAGG | Carbone and Kohn (1999) |
EF1-986R | TAC TTG AAG GAA CCC TTA CC | ||
rpb2 | RPB2-5F2 | GGGGWGAYCAGAAGAAGGC | Sung et al. (2007) |
fRPB2-7cR | CCCATRGCTTGTYYRCCCAT | ||
Alt a 1 | Alt-For | ATGCAGTTCACCACCATCGC | Hong et al. (2005) |
Alt-Rev | ACGAGGGTGAYGTAGGCGTC | ||
endoPG | PG3 | TACCATGGTTCTTTCCGA | Andrew et al. (2009) |
PG2b | GAGAATTCRCARTCRTCYTGRTT | ||
OPA10-2 | OPA 10-2R | GATTCGCAGCAGGGAAACTA | Andrew et al. (2009) |
OPA 10-2L | TCGCAGTAAGACACA TTCTACG |
PCR, polymerase chain reaction; SSU, small subunit ribosomal RNA; LSU, large subunit ribosomal RNA; ITS, internal transcribed spacer region; gapdh, glyceraldehyde 3-phosphate dehydrogenase; tef1, translation elongation factor 1-alpha; rpb2, RNA polymerase second largest subunit; Alt a 1, Alternaria major allergen gene 1; endoPG, endopolygalacturonase; OPA10-2, anonymous region.
Table 2.
Name | Strain number | GeneBank accession numbers | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
SSU | LSU | ITS | gapdh | tef1 | rpb2 | Alt a1 | endoPG | OPA10-2 | ||
Alternaria sp. | SYP-1495 | PV172330 a | PV172335 a | PV172340 a | PV175757 a | PV175762 a | PV175767 a | PV175772 a | PV175777 a | PV175782 a |
SYP-1496 | PV172331 a | PV172336 a | PV172341 a | PV175758 a | PV175763 a | PV175768 a | PV175773 a | PV175778 a | PV175783 a | |
SYP-1497 | PV172332 a | PV172337 a | PV172342 a | PV175759 a | PV175764 a | PV175769 a | PV175774 a | PV175779 a | PV175784 a | |
SYP-1498 | PV172333 a | PV172338 a | PV172343 a | PV175760 a | PV175765 a | PV175770 a | PV175775 a | PV175780 a | PV175785 a | |
SYP-1499 | PV172334 a | PV172339 a | PV172344 a | PV175761 a | PV175766 a | PV175771 a | PV175776 a | PV175781 a | PV175786 a | |
A. alternata | CBS 102598 T | KP124951 | KP124481 | KP124329 | KP124184 | KP125105 | KP124797 | KP123878 | KP124031 | KP124638 |
A. alternata | CBS 102600 T | KP124953 | KP124483 | KP124331 | KP124186 | KP125107 | KP124799 | KP123880 | KP124033 | KP124640 |
A. alternata | CBS 118814 T | KP124979 | KP124509 | KP124357 | KP124211 | KP125133 | KP124825 | KP123906 | KP124059 | KP124669 |
A. alternata | CBS 916.96 T | KC584507 | DQ678082 | AF347031 | AY278808 | KC584634 | KC584375 | AY563301 | JQ811978 | KP124632 |
A. alternata | CBS 918.96 R | KC584567 | KC584311 | AF347032 | AY278809 | KC584693 | KC584435 | AY563302 | KP124026 | KP124633 |
A. alternata | CBS 119543 T | KP124985 | KP124515 | KP124363 | KP124215 | KP125139 | KP124831 | KP123911 | KP124065 | KP124674 |
A. alternata | CBS 106.24 T | KP124919 | KP124449 | KP124298 | KP124155 | KP125073 | KP124766 | KP123847 | AY295020 | JQ800620 |
A. alstroemeriae | CBS 118809 T | KP124918 | KP124448 | KP124297 | KP124154 | KP125072 | KP124765 | - | KP123994 | KP124602 |
A. alternantherae | CBS 124392 | KC584506 | KC584251 | KC584179 | KC584096 | KC584633 | KC584374 | KP123846 | - | - |
A. arborescens | CBS 102605 T | KC584509 | KC584253 | AF347033 | AY278810 | KC584636 | KC584377 | AY563303 | AY295028 | KP124712 |
A. betae-kenyensis | CBS 118810 T | KP125042 | KP124572 | KP124419 | KP124270 | KP125197 | KP124888 | KP123966 | KP124123 | KP124733 |
A. burnsii | CBS 107.38 T | KP125043 | KP124573 | KP124420 | JQ646305 | KP125198 | KP124889 | KP123967 | KP124124 | KP124734 |
A. eichhorniae | CBS 489.92 T | KP125049 | KP124579 | KC146356 | KP124276 | KP125204 | KP124895 | KP123973 | KP124130 | KP124740 |
A. gaisen | CBS 118488 R | KP125051 | KP124581 | KP124427 | KP124278 | KP125206 | KP124897 | KP123975 | KP124132 | KP124743 |
A. gossypina | CBS 104.32 T | KP125054 | KP124584 | KP124430 | JQ646312 | KP125209 | KP124900 | JQ646395 | KP124135 | KP124746 |
A. iridiaustralis | CBS 118486 T | KP125059 | KP124589 | KP124435 | KP124284 | KP125214 | KP124905 | KP123981 | KP124140 | KP124751 |
A. jacinthicola | CBS 133751 T | KP125062 | KP124592 | KP124438 | KP124287 | KP125217 | KP124908 | KP123984 | KP124143 | KP124754 |
A. longipes | CBS 540.94 R | KC584541 | KC584285 | AY278835 | AY278811 | KC584667 | KC584409 | AY563304 | KP124147 | KP124758 |
A. avenicola | CBS 121459 T | KC584512 | KC584256 | KC584183 | KC584100 | KC584639 | KC584380 | - | - | - |
A. brassicicola | CBS 118699 R | KC584515 | KC584259 | JX499031 | KC584103 | KC584642 | KC584383 | - | - | - |
A. infectoria | CBS 210.86 T | KC584536 | KC584280 | DQ323697 | AY278793 | KC584662 | KC584404 | - | - | - |
A. papavericola | CBS 116606 T | KC584579 | KC584321 | FJ357310 | FJ357298 | KC584705 | KC584446 | - | - | - |
A. solani | CBS 109157 T | - | - | KJ718238 | GQ180080 | KJ718585 | KJ718413 | KJ718746 | - | - |
SSU, small subunit ribosomal RNA; LSU, large subunit ribosomal RNA; ITS, internal transcribed spacer region; gapdh, glyceraldehyde 3-phosphate dehydro tion factor 1-alpha; rpb2, RNA polymerase second largest subunit; Alt a 1, Alternaria major allergen gene 1; endoPG, endopolygalacturonase; OPA10-2, an a ogenase; tef1, translation elonganonymous region.
Fig. 2.
